Error running SViCT
Hi,
Am trying to run SViCT for structural variant calling for ctDNA samples. I used GATK to convert Fastq files to BAM and sorted. Command :
./svict -i ../CRC1.sorted.bam -r ../FastQC/hg38.fa -o CRC1 Assembling contigs... Segmentation fault (core dumped)
Now, it just gives me that and I looked online but I couldn't find any help. Do you think it's a matter of size of the file? What should I do in such case?
Thank you in advance..
• 1,006 views
•
link
written
by
arshiya.g02 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Segmentation Fault error when running salmon quant
written by Daniel •
-
scATAC-pro command issue
written by sidrah.maryam •
-
Rename sample names in g.vcf files fails [Error Segmentation fault (core dumped) ]
written by Alewa
-
transcript assembling problem by cufflinks
written by kuhelikadas1995 •
-
why is there "." in Filter?
written by arshiya.g02 •
-
Unable to generate VCF
written by arshiya.g02 •
-
Segmentation failed (core dumped) error in featureCounts
written by Batu
-
segmentation fault (core dumped) when running unikalow
written by Yingzi Zhang
-
Running Pindel on bam files from Ion Torrent
written by genya35 •
-
bwa mem seq and Segmentation fault (core dumped)
written by Whoknows
Please post on the issues page: https://github.com/vpc-ccg/svict/issues
I came across this error, too. Increasing the memory did not make the problem go away.
Its already reported in the repository but no response from their side