RNA-Seq tissue references?

Hi!

I'm doing a study about transcriptome variations in mutated genomes but to compare them I need a reference transcriptome of the tissue (e.g. muscle) does anyone knows a database from where I can download a "reference" transcriptome? Thanks!

Best regards,

rna-seq

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updated 6.7 years ago by padwalmk

• written 6.7 years ago by crvaglio •

Not sure if you can use GTEx portal or Illumina's body map 2.0 data.

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written 6.7 years ago by GenoMax

1 answer

Hi, You can search for NCBI SRA with the filtering of RNA-Seq, Human, and Muscle. Then download the SRA files matching your criteria. I am pretty hopeful that you will definitely get some muscle tissue samples.

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written 6.7 years ago by padwalmk

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