thanks for both answers. Does this file kit and organism specific?
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Analyzing Whole exome Seq for mouse
I have a WES data set with two PE biological replicates. I am trying to follow this specific workflow. But I keep getting into problems. The biggest one is that this pipeline was set to work with human data. So I can't even get all the data.
I was wondering if there are any specific pipelines/workflow for Whole Exome Sequencing, which are either mouse-specific or not org.-specific at all.
Concerning the above mentioned pipeline - where can I get the exome target capture file (bed format) from?
thanks
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When I'm looking at the Nextera file for example, They only offers files for human exome. Does it means that they do offer a kit at all for mouse?
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I'm still trying to figure it out.
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ok, the kit is from Agilent Mouse exome capture library
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As some other files are missing, are there any other pipeline worth testing? thanks
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