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SnpEff question for Variant annotation

I want to annotate the variant predicted from GRCh38 build. Does SnpEFF use GRCh38?

snp

1 answer

Hello!

This is config file used to download databases as soon as you update or download SnpEFF. snpEff_config which states that there is a provision for GRCh38 build. For future reference.

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