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bulk-RNAseq Endogenous retrovirus (ERV) Analysis for mouse

Hi all,

I'm looking to analyze mouse ERVs from bulk-RNAseq but have mostly found data resources and pipelines for human (ERVmap, HERVd). I've also found a mouse ERE database that appears to no longer be supported.

The only reasonable resource I've found for mouse ERVs is gEVE but wanted to ask if anyone is aware of additional resources?

rna-seq genome
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updated by Mark Mark • written by Ready2Rapture • Ready2Rapture

1 answer

Can you be more specific regarding what resources you're after?

You might have better luck with gEVE: https://academic.oup.com/database/article/doi/10.1093/database/baw087/2630466

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written by Mark Mark

This is basically it. I wanted to see if there were any alternatives to gEVE.

Thanks!

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written by Ready2Rapture • Ready2Rapture

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