BED to HDF5 in Python. Simple Script?
I'm looking for some simple boilerplate script that efficiently converts a BED file (only Chrom Start End) to HDF5 in python.
All the examples I see online are convoluted and bloated with functions that I do not need (HI-C/GTF).
I do not need a CLI script, I would like to implement a BED -> HDF5 conversion within a larger python script.
Thanks.
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Can you provide some examples of these file types and their formats?
Preferably some input data, and desired mocked up output data so we know what sort of transformations are required.
You should also give this a go yourself and show us what you've been trying/how far you got.