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How to find exon-intron boundaries, donor splice sites, position of donor splice sites, number of bases in each position and entropy in a chromosome using UCSC Browser?
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I asked your question in google.
One of the answers was the following:
https://academic.oup.com/nar/article/41/4/e51/2414628
It's a NAR-paper from 2013, read it - it answers most of your questions.
"TrueSight: a new algorithm for splice junction detection using RNA-seq."
Yang Li, Hongmei Li-Byarlay, Paul Burns, Mark Borodovsky, Gene E. Robinson, Jian Ma
Nucleic Acids Research, Volume 41, Issue 4, 1 February 2013, Page e51,
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Is this an assignment question?