ilumina methylation 450k array
Error in Rnbeads workflow The sample annotation file needs barcode, sentrix id sample well position sample group which is not available in geo ncbi csv file. How to proceed further?
Thanks in advance
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ayeshatariq78 •
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could you elaborate and add more details in your question ( command you used, etc..)
I have downloaded idat files from GEO and created sample csv my self. But the R is showing an erroe that idat files are not present in the base directory. why it is not reading my idat files? I have removed gz extension and they are not compressed. Thnaks.