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RRBS data analysis using RnBeads give Scan() error
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17 months ago
rahel14350 • 30
United States

Dear all,

I am working on RRBS data using RnBeads but in the beginning of the analysis I have this Error from R:

result <- rnb.run.analysis(dir.reports=report.dir, data.source=data.source, data.type="bs.bed.dir") 2017-07-31 15:12:51 1.0 STATUS COMPLETED Automatically parsing the provided sample annotation file Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, : scan() expected 'a real', got ''12/12''

Is there anyone can help me? Many thanks in advance, Rahel

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17 months ago
rahel14350 • 30
United States

So, I found the solution, The reason was that I forgot to define "import.bed.style" like this: rnb.options(import.bed.style= "EPP")

Now everything is working as usual without error!

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