conversion between branch length to SNP numbers

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4.6 years ago

fuguchan • 0

I'm a beginner of bioinfomatics. I generated a tree using raxml and read the obtained file using figtree. The scale of tree was shown as "200" with a scale bar and I obtained branch length in each.

However, I wanted to obtained the SNP numbers in each node. How can I convert the branch lengths to SNP numbers?

snp raxml figtree • 1.3k views

ADD COMMENT • link updated 13 months ago by Ram 43k • written 4.6 years ago by fuguchan • 0

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Hi fuguchan,

small educational note: Tool requests are Question posts, not Tool posts (the latter are for announcements of new software etc). I’ve changed it for you this time, but please bear it in mind for the future.

ADD REPLY • link 4.6 years ago by lieven.sterck 15k

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Hi, lieven. Thank you for your kindness. I'll keep in mind.

ADD REPLY • link 4.6 years ago by fuguchan • 0

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Did you solve this? Do you need to include the rate of heterogeneity in your conversion calculation?

ADD REPLY • link 4.4 years ago by thomasrsewell ▴ 10

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