Multi samples VCF file manipulation

I have VCF file with multiple samples. How to list down the SNP present in more than one sample with sample ids.

vcf

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written 6.9 years ago by Abdul Rafay Khan

merge the vcf using , for example, 'bcftools merge'. Then filter using, for example, 'gatk SelectVariant' , or 'bcftools view -i'

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written 6.9 years ago by Pierre Lindenbaum

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