I am trying to find public datasets for transcription factor ChIP-seq and histone modification ChiP-seq for common cancer cell lines. I know about ENCODE. Are there other databases that or bigger and more comprehensive? Thanks
2 answers
The Roadmap Epigenome project is huge and contains many cell lines. The genome browser for it is also very good.
ReMap is probably as comprehesive as it gets right now http://tagc.univ-mrs.fr/remap/
Welcome to ReMap an integrative analysis of transcriptional regulators ChIP-seq experiments from both Public and Encode datasets. The ReMap atlas consists of 80 million peaks from 485 transcription factors (TFs), transcription coactivators (TCAs) and chromatin-remodeling factors (CRFs). The atlas is available to browse or download either for a given TF or cell line, or for the entire dataset.
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Thanks the both of you