How to export distances measured in pymol, like 100 numbers, in fasta format or text format?
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FASTA contains sequences with headers. How does the information you're trying to export map to that? Plain text should be doable, as almost every format in bioinformatics is plain text :-)
Hi RamRS, So how to export to plain text in pymol? I have tried, but failed. Thank you very much!
I don't know pymol, but if you were to say what you've tried, others might be able to point you to the changes you need to make.
Hi RamRS, I will try to express the details later. Thank you very much!
See if this helps you.
I will sound like a broken record, but probably there are other programs or scripts that can do this more efficiently than PyMol if you truly need it done on a large scale. The distance formula is not very complicated and here is one way to do it using BioPython.
Hi Mensur, First I have to measure the distances in pymol, which is a visualization tool for 3D structures. Then I would like to export the values for these distances. I will try biopython later, though I have no idea where to start. Thank you very much anyway!