How To Use Hmmseg Program Before Running Segmentation · Biostar

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How To Use Hmmseg Program Before Running Segmentation

Hi All, Does anybody know how to use HMMseg program (http://noble.gs.washington.edu/proj/hmmseg/)? before running segmentation, we need to pre-process bed file (make equally-spaced coordinates). There is two script, bed.R and interp.R which I think get the data (hg17) from UCSC(ENCODE) and ... How about local data? and mm9?

Thank you very much in advance

hmm

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updated 12.9 years ago by Istvan Albert

• written 12.9 years ago by Maria •

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