WGCNA input file
Dear all, after RNA-SEQ analysis, (RSEM, align_and_estimate_abundance.pl, abundance_estimates_to_matrix.pl and so on..) I got several files:
genes.TMM.EXPR.matrix
genes.TPM.not_cross_norm
I want to do WGCNA analysis next, so which file should I use for WGCNA analysis or none of the file can be used?
Thank you!
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mxlsherry1992 •
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Please see related thread: Where to find WGCNA tutorials? and Kevin's answer about a WGCNA tutorial that may help: https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/
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