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Accessing ENCODE data through R

Hi everyone,

I would like to download some ENCODE data. I want to download which genes present in their promoter the binding of particular Transcription Factor. Starting from a trasncription factor I would like an easy way to retrieve a gene list (not sequences, but more processed data) where they find that Transcription Factor. The best, will be a way to access this data through R.

Thank you for your help

r encode

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updated 7.1 years ago by ATpoint

• written 7.1 years ago by salvatore.raieli2

Maybe ENCODExplorer package?

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written 7.1 years ago by zx8754

1 answer

If it is human, try the ReMap database and intersect your regions with it.

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written 7.1 years ago by ATpoint

thank you, I downloaded the bed file for the TF I needed

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written 7.1 years ago by salvatore.raieli2

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