Filter Variant in DNA repair genes

Hi I would like to filter the SNPs in/near DNA repair genes from a list of almost 500000 SNPs, I tried with biomart but no success. Could any one help ? Thank you

snp r gene

• 955 views • link

written 7.1 years ago by mel22

I tried with biomart but no success.

Then please show us what you tried, and we can put you on the right track.

I would try bedtools closest

• 0 views • link

written 7.1 years ago by WouterDeCoster

0 answers

No answers yet.

More posts like this

I need a tool that allows me to see a whole genome and point out previously annotated genes
written 3.3 years ago by Enrico •

Hi guys. I would like to know if someone knows a tool that can explicitly show the location of a set of genes I have …
How to find neighbouring genes
written 4.6 years ago by Lucas •

Hi, I have a list of 7319 repeated elements and their chromosomal location and I want to know all the genes that are around where …
How to map ENSEMBL Transcript IDs to coding/non-coding/miRNA
written 5.6 years ago by SunRise2019 •

I have microarray gene expression data obtained from Affymetrix HTA 2.0. Using the annotation file, I was able to map the transcript clusters IDs (e.g. …
How can I identify membrane molecules within a gene list?
written 5.7 years ago by adri.vife •

Hello everybody, I was wondering how can I identify if there are membrane molecules / receptors in a large list of genes. I tried with …
Variants selection with Gene Ontology
written 6.3 years ago by mel22

Hi I have SNP data from a DNA array , with GeneOontology tool on R , I selected SNP on DNA repair genes. How this …
Ensembl Biomart Allele Frequency for different ethnicity
written 7.6 years ago by iside •

Hi all, I am using Ensembl BioMart to retrieve the allele frequency for a list of SNPs. I need to have this information for different …
How to get a unique target gene for each SNP from different chromosomes/genes in a list at once?
written 9.0 years ago by cmcouto.silva •

**Hello, folks!** I have a huge list with SNPs from different chromosomes/genes (human data set), and I wanna know the target genes for each one …
getting tag snps
written 9.3 years ago by 496527 •

I have almost 300s Genes list (only name). I want to find tag SNPs on each gene Is there any tools to get tag SNPs …
Map SNP to closest protein coding gene within specific flanking distance using R
written 11.8 years ago by Alex •

Hello, I have seen a number of previous posts on mapping SNPs to genes. I wish to map a list of SNPs to the closest …
How To Map Ensembl Exon Ids To Gene Ids?
written 15.4 years ago by Yuan •

Hi, I have a list of Ensembl exon ids (ENSE***), and I would like to map them back to genes. I tried to do it …