Question: DESeq2 results versus by eye comparison in IGV
Naive question but is it common for the fold change in gene expression for a locus to appear greater by eye in IGV than in the fold change calculated by DESeq2?
For example, the log2FC of geneA is -1.667704322
These tracks are group autoscaled.
Thank you in advance!
IGV likely is not normalized, and DESeq is.
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