Biostar Beta. Not for public use.
Question: HiSAT2 edit distance option
Entering edit mode

Hi all,

I'm analyzing single-end RNA-seq data and was wondering if there is a way to set the edit distance while using HiSAT2. It is not mentioned in the manual, should I somehow arrange the --score-min function?

I was also wondering if there is an option like TopHat's --microexon-search to look for reads that map to microexons.

Cheers, Gökberk

ADD COMMENTlink 9 months ago gokberk • 30

Login before adding your answer.

Similar Posts
Loading Similar Posts
Powered by the version 2.0