where is parameter of significant level to call copynumber on 'CNVkit'???

i ran CNVkit to call copynumber. But it looks so noisy. thus i want to modify parameter(e.g significant level ..)

But i cant find where

sequencing next-gen genome r

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written 7.2 years ago by 9521ljh •

Hi , You have options here in CNVkint listed like --drop-low-coverage with whom you can play.

Best

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written 7.2 years ago by Titus

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