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Tiling Array Analysis

Which software is recommended to analyze tiling array data for expression analysis?

gene microarray
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updated by Rm Rm • written by Litali • Litali

2 answers

You can check out

  • cisGenome and for analyzing tiling array data you can read the manual
  • Tilescope which is more handy but doesn't seem to work right now.
  • If you want to analyze through R/Bioconductor then Starr package
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written by Thaman Thaman

Thank you, I see Starr is for affymetrix, I need for nimblegen tiling array for a novel genome expression,,,

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written by Litali • Litali

I would recommend NTAP - NimbleGen Tiling Array Analysis Package.

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written by Rm Rm

I saw it is for Chip-chip analysis, is it different from expression analysis?

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written by Bdv • Bdv

You can use it for exp analysis too, with little tweeks

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written by Rm Rm

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