Variants in Exon or Intron
After getting the variants using gatk pipeline, how can I know if the variant is in an exon or intron?
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shawn.w.foley
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zakkaknadine •
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zakkaknadine •
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Look into snpEff, it'll classify SNPs based on location, effect on the protein (if they're in exons) and the potential for them to be low, medium, or highly disruptive.
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