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5.0 years ago
dthorbur
★
1.9k
I am looking for a command line program that can perform the HKA test on fasta files. I have seen that programs like dnaSP are available, but I don't believe they are command line. Maybe I've missed a few, but I can't seem to find anything to calculate these values on a computing cluster.
I would also like to compute MacDonald Kreitman values on the same sequences, but I do know that packages like Popgenome for R are available.
Thanks.
HKA direct on this page?