How do I extract out ITS region from assembled whole genome sequence of a fungi?
Hi, I am trying to make a computational identification of a whole genome fungal sequence. At the moment, I have a fungal whole genome sequence (300 contigs - fasta sequences). I am thinking of extracting out only the full ITS region. I am wondering what tool I can use to do this and an acceptable protocol to follow.
Thank you
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Found this but never used : https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/2041-210X.12073
Thank you so much. I will try this.
Did you ever find a solution to extracting the ITS region from the full genome sequence? I am currently working on a similar project now. Thank you for any help or advice!