My first post here, so, sorry for the bad formatting.
I had a bioinformatics subject a year ago and I'm getting into it again.
I'm having some trouble going through fastx quality stats. I got an example from the classes I had, and the command line, was simple, I just want to output
.txt files, but the program is outputting
fastx_quality_stats -i A_PE_1.fq -o A_PE_1.txt
The files are coming out as
A_PE_1.txt? instead of the intended.
I tried using the rename command without success.
Any help would be appreciated :)