Looking for a program to calculate synonomous site values · Biostar

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Looking for a program to calculate synonomous site values

Hello,

I have several vcf files from different populations. I want to find a way to look across these files and calculate the degeneracy of each site. I've used snpEff to call SNPs as either synonymous or amino acid changing, however, I'm having trouble locating software that will tell me the degeneracy of each site. I've had a hard time finding what I'm looking for on google, probably because I'm phrasing the searches poorly. Any insight would be appreciated.

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updated 6.5 years ago by Biostar

• written 6.5 years ago by ahlawrence •

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