I have a bam file and I want to get all the positions where a single read is mapped. I tired searching for the solution everywhere but what I am getting is the no of reads in a particular region (coverage). But I need just the opposite. I need the count of the number of regions where a single read is mapped.
SRR003467.28691 is mapped at 3 locations respective positions are 19000156 , 19000228, 19000878