Hi, I'm using ngsplot to generate a heatmap for ChIP-seq coverage. However, I would like to replot the heatmap myself with the underlying data provided by ngsplot.
I'm a bit confused about the scaling though. The heatmap generated by ngsplot has a scale of (0, 0.9) whereas the max value of the hm data provided by the program goes to 2.5. Is there a subset of data (outliers) that ngsplot ignores during the generation of its plots?