How do I download TCGA SNV data for patients with ER+/HER2- breast cancer?

Question

[graeme.thorn]

As per the question above, I want to download variation data for ER+ HER2- patients only from the TGCA. There is no option to facet in the GDC Data Portal to get these patients only, and I don't want to have to download all the data from the 1000+ patients and filter them afterwards if I don't have to.

Is there a quick way to obtain data from only these patients?

Answer 1

[Kevin Blighe]

Information on receptor status can be found in the clinical data: A: How to download triple negative breast cancer RNA-seq fpkm data from GDC.

Kevin

[graeme.thorn]

Thanks! I managed to get some of it out of cBioPortal too, but I aggregated enough together to get what I needed to.