I have run Bowtie2 for aligning ChIP-seq data and in one data I faced the below error
Error: Read SN7001318:103:H86L8ADXX:2:2102:16521:69527 1:N:0:8 has more read characters than quality values.
terminate called after throwing an instance of 'int'
Aborted (core dumped)
(ERR): bowtie2-align exited with value 134
I like to know, can I continue with the output of bowtie (I still have .bam file) or I should remove related read?