How do I perform MSI detection on fastq format libraries?
I am a bachelor's student with a beginner level experience in Bioinformatics. As part of my B-tech project I have to detect Microsatellite Instabilty in Gastric Cancer libraries with Paired Normal and tumour sequences in fastq format. I have been reading about tools like MSISensor. Would really appreciate any help on how to go about it and use it.
• 1,175 views
•
link
written
by
mandhirsikander •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
ML project ideas in bioinformatics to get started
written by rachana •
-
Job: Available Bioinformatics PhD Position at the Med Uni Graz, Austria
written by Julia Feichtinger •
-
Job: 1 Bioinformatician position in San Sebastian (Spain)
written by ev97 •
-
Job: Seeking Jr. Bioinformatician Position
written by santos48 •
-
Job: Bioinformatics Analyst/Post-Doctoral Associate (UT MD Anderson Cancer Center)
written by Kasthuri
-
SVA combat error covariate is confounded with batch
written by CL •
-
Job: Bioinformatics Scientist/Programmer, Clinical Cancer Genomics Laboratory at UCSF
written by ccglucsf
-
Project suggestions with paired Tumour and Normal RNA Seq data libraries
written by mandhirsikander •
-
Job: Bioinformaticist with Intermountain Precision Genomics
written by Intermountain Healthcare •
-
Hi. A Beginner. Need Some Ideas For Project.
written by cv.napping •
