methylSeekR error about missing value
I have meet an error with the software MethylSeekR. When i try to use the readMethylome function to read the data, it posts such error:
Error in validObject(.Object) : invalid class “GRanges” object: 'seqnames(x)' contains missing values
However when i try to use the sumis.na(filename)), the result is 0, that is sumis.na(filename)) = 0 .
I am not sure the reason why it gives me such message. Would you please give me some suggestion??
best wishes
xia
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Can you show the result of
head(filename)-- my guess at this point is thatfilenameis just a character string (pointing to the file) and not the actual file content.