how to get fasta or fastaQ sequences of the differentially expressed gene which i got using edgeR

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5.2 years ago

deeksha3696 ▴ 10

hey all I want to know from where can I get the fasta or fastaQ sequences of the differentially expressed genes which I got using edgeR

THANKS

RNA-Seq • 1.1k views

ADD COMMENT • link 5.2 years ago by deeksha3696 ▴ 10

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I guess you started edgeR from count data?

ADD REPLY • link 5.2 years ago by WouterDeCoster 47k

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RNA-seq data analysis starts from raw sequencing data (fastq files). This can be obtained from NCBI or ENA (e.g. Fast download of FASTQ files and metadata from the European Nucleotide Archive (ENA) ). I suggest you start with reading this workflow to get the basic concepts. edgeR has outstanding documentation which can by found via google.

ADD REPLY • link 5.2 years ago by ATpoint 82k

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Do you have access to bam files ? deeksha3696

ADD REPLY • link 5.2 years ago by cpad0112 21k

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