how to get fasta or fastaQ sequences of the differentially expressed gene which i got using edgeR
hey all I want to know from where can I get the fasta or fastaQ sequences of the differentially expressed genes which I got using edgeR
THANKS
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deeksha3696 •
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Is this related to annotation and genetic variants ?
I guess you started edgeR from count data?
RNA-seq data analysis starts from raw sequencing data (fastq files). This can be obtained from NCBI or ENA (e.g. Fast download of FASTQ files and metadata from the European Nucleotide Archive (ENA) ). I suggest you start with reading this workflow to get the basic concepts. edgeR has outstanding documentation which can by found via google.
Do you have access to bam files ? deeksha3696