Extracting alleles and counts from BAM file
Hello,
Does anyone know any tools for extracting alleles and their respective counts from BAM files given a set of SNP positions?
Thanks
• 109 views
•
link
written
by
dango147 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Software For MHC Typing Using Mouse NGS (WES or RNAseq)?
written by kilcdincer •
-
PacBio Raw Data File Formats
written by priya.bmg •
-
Expression Counts from Bam Files of miRNA-seq data
written by tfo •
-
Should I remove duplicates?
written by zizigolu
-
GO network analysis
written by shubhra.bhattacharya
-
coverage on exons with bedtools genomecov
written by guillaume.rbt
-
SNP mRNA Flanking Sequence Retrieval
written by RadiantZephyr •
-
dbSNP: minor alleles for a list of SNPs
written by dora
-
Get multiple snps coverage (allelic depth) from bam files
written by MAPK
-
Post-Translation Modification Prediction From Sequence Data
written by Greg •
what did you find so far ?
Hello Pierre, I guess it was too soon to post, next time I'll search a bit more. I'll try mpileup with the -A option and see where it takes me
cool. Feel free to close your post.