Expression Counts from Bam Files of miRNA-seq data
Hello,
I am new to bioinformatics. I have been given bam files (aligned to a reference genome) of miRNA-seq data. My goal at this moment is to retrieve miRNA expression counts. The bam files are only labeled with the chromosome locus for each miRNA, not the miRNA names themselves, making it seemingly impossible to retrieve miRNA counts.
Does anyone have any suggestions for how to approach this problem? I feel very stuck and lost.
1 answer
Log in to answer this question.
More posts like this
-
Which locus should be considered the true ortholog after liftOver disagreement between chrUn and ch…
written by jhonatan.henrique •
-
How to create a command that matches 13 characters in each column to be extracted into a new file, …
written by MetagenomicsPlease •
-
sorted bam file generated from gff transcript fastas, how to get counts with HTseq?
written by RNAseqer
-
VCF generation of UMI tagged data
written by Saurabh •
-
SAM file annotation
written by tfo •
-
Extract base information from aligned reads in a sam file
written by yliueagle
-
Question about Illumina Infinium 450K
written by muriichu •
-
Tools to extract per-locus alignments from bam files aligned using bwa
written by betsy.s.collins
-
Gene specific region visualization in Alignment (.bam) or Variant calling file (.vcf) in IGV
written by ravi.uhdnis
-
Rna-Seq Tophat-Cufflinks Pipeline Output - Questionable Isoforms
written by renyangsu •
