GO terms from keywords in R

Hi,

I'm looking for a way to retrieve go terms programmatically in R using a set of keywords. Any ideas?

Thanks

r r ontology

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updated 7.5 years ago by EagleEye

• written 7.5 years ago by kakukeshi

BiomaRt package might be one way to go. Did you try your favorite internet search engine?

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written 7.5 years ago by Friederike

1 answer

1) Use GeneSCF's 'prepare_database' (example) module to download all GO terms with genes as a simple text file.

2) Use this text file and grep the terms you want.

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written 7.5 years ago by EagleEye

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