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Question: GO terms from keywords in R
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Hi,

I'm looking for a way to retrieve go terms programmatically in R using a set of keywords. Any ideas?

Thanks

ADD COMMENTlink 12 months ago kakukeshi • 50 • updated 12 months ago EagleEye 6.4k
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BiomaRt package might be one way to go. Did you try your favorite internet search engine?

ADD REPLYlink 12 months ago
Friederike
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1) Use GeneSCF's 'prepare_database' (example) module to download all GO terms with genes as a simple text file.

2) Use this text file and grep the terms you want.

ADD COMMENTlink 12 months ago EagleEye 6.4k

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