Hello! I have a problem with format files. I need to compare the score from two alignments. One is in ".afa" format, second has ".aln" format (after t-coffee alignment). I have to use a mscore tool, but in command it requires two fasta files. ".afa" is ok, but how can i convert ".aln" to fasta?
Now I do it in http://www.sing-group.org/ALTER/. But here I can only convert one file at a time. I need to convert several hundred files.
Any advice?
•
written
by
MichaelTrev •
There's the perl fasconvert utility in the FAST module or the seqret utility from EMBOSS.
Thank u for an answer. I just downloaded and build emboss on my PC, can u give me an example of how to use it properly? I have file "a.aln" and I need it in ".fasta". I'm tried to read doc's but can't find it.
EDIT: Ok i got it ! It's just "seqret" command ! Thank u so much for help!
Log in to answer this question.
