Hi everyone,
For an allele mining project I need to generate in silico NGS data. I have chosen to use Grinder to do so. I would like to add randomly generated SNPs to my reference genome, is any software available to do that ?
Thanks for help!
You could try mutate.sh from BBTools/BBMap. mutate.sh can also produce a VCF file of the SNPs added. You can also generate random Illumina reads with the BBTool randomreads.sh
https://sourceforge.net/projects/bbmap/
Hi, you can also try Simulome, it is quite customisable.
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