This is a test version of Biostars. For the public version, visit https://www.biostars.org.
PLINK --r2 square: snp ids are not written

Hey Guys, I'm running plink as bellow plink --r2 square --bfile [file] --out out and what I get is a matrix without any header, then where is the snp ids? How do I know which column correspond to which snp? Thanks

snp plink ld r2

1 answer

You can use e.g. --write-snplist for that.

Log in to answer this question.