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Please search online on how to write loops. The zip file is just a tarball of the 100 PDB files. You have the logic ready to deal with one PDB file, surely that can be run in a loop to deal with a 100.
There was a post in Stackoverflow about that.
https://stackoverflow.com/questions/44669318/reading-an-entire-directory-of-pdb-files-using-biopython
it describes a for loop iterating over all files.
Hello a4appy23!
We believe that this post does not fit the main topic of this site.
Not really bioinformatics, despite using PDB files. Search google for advice on creating loops in shell or python.
For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.
If you disagree please tell us why in a reply below, we'll be happy to talk about it.
Cheers!