Importing a fastq file

Hello, how do I import a fastq file from my local windows computer into fluent terminal wls

fastq

• 1,737 views • link

updated 2.2 years ago by size_t •

• written 2.3 years ago by oumo •

Can you explain better what you mean? If I understand correctly, your fastq file must be in the Ubuntu home folder of your wsl to be able to analyze it from the terminal

• 0 views • link

written 2.3 years ago by marco.barr •

Windows is mounted as /mnt/c/... in WSL (at least in WSL2).

• 0 views • link

written 2.3 years ago by ATpoint

That's right.. With cp command from terminal

cp /mnt/c/path/to/your/fastq/file.fastq /path/in/wsl/

• 0 views • link

written 2.3 years ago by marco.barr •

The fastq file is in my local disk, and I want to upload it to Ubuntu

• 0 views • link

written 2.3 years ago by oumo •

1 answer

run command explorer.exe . in wsl terminal, and then drag file to folder

• 0 views • link

written 2.2 years ago by size_t •

More posts like this

HLA alignment, approximation and frequencies
written 1.7 years ago by oumo •

Hello, I have tried aligning this fastq file (long reads from ONT sequencing) with minimap2. I came up with a sam file, converted to bam …
How do I make my code go through all through my list in my file.
written 5.4 years ago by trejomarco6 •

hello = open("humanSeq.txt", "r") l = [] for line in hello: fields = line.split() l.append(fields[0]) import Bio from Bio import Entrez Entrez.email = "trejomarco@test.edu" handle …
Cannot add tools in local galaxy
written 5.7 years ago by szy0931 •

I installed the local Galaxy in Ubuntu subsystem in my Windows 10 computer. I used "nano galaxy.yml" to enter galaxy yml file and added my …
Donwload file from within a server
written 6.8 years ago by JulianC •

Hi! I have to download some raw reads in a ssh server. Since I have no large storage space, I have to download them in …
Import fasta files from local machine into MAC terminal BFX server
written 6.9 years ago by istloui1 •

How do I import fasta files from local MAC computer onto BFX server using the terminal, to analyze sequence in glimmer 3.02?
Mapping long FASTQ reads to short shRNA library
written 7.1 years ago by SarahWang •

Hello there, I'm struggling with how to map a ~100 bp FASTQ reads to a 10k shRNA library. I've used bowtie2 --local, seems fruitless. My …
Alternatives to FASTQ/A Collapser of FASTX-Toolkit
written 8.3 years ago by clam •

Hi All, I am trying to analyze nextgen seguencing data with Biopython (on a Windows computer). My data has certain sequences that appear many times. …
getfasta won't read my database
written 9.1 years ago by Justin.kallman •

I have made a local NCBI database on my computer, and it works. I am now trying to extract sequences from the database after i …
How To Obtain And Install Seqtk
written 13.3 years ago by jahndavik2000 •

<p>I am looking for a script to samle reads from paired fastq files. I understand that 'seqtk' may be what I'm looking for. How can …
Tablet Assembly Viewer
written 15.4 years ago by User 4133 •

<p>Hello, I'm trying to run Tablet Assembly Visualization in my remote machine from my local terminal. It doesn't works. Suggestion? Alternatively, how can I import …