This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Is there any open-source Illumina bacterial genome mapping and annotation website?

Is there any open-source Illumina bacterial genome mapping and annotation website, using RAST or similar in an automated way. Need software codes to develop a similar service. Thank you.

software mapping open source service annotation
• 1,513 views • link
updated by h.mon h.mon • written by bioinf_ukraine • bioinf_ukraine

Please do not bother responding to this question. It is likely posted by a bot.

• 0 views • link
written by GenoMax GenoMax

So what If you and me are both robotic bots, does it have an effect on life expectancy and quality?

• 0 views • link
written by bioinf_ukraine • bioinf_ukraine

Thank you, I am not a native English speaker, so accept my appologies in turn, I am always responsible for what I write and do

• 0 views • link
written by bioinf_ukraine • bioinf_ukraine

I have a Prokka, however I need to send a fasta contigs to the RAST via the Linux Shell or a Python code, is it possible somehow?

• 1 views • link
written by bioinf_ukraine • bioinf_ukraine

Looks like there is a way to batch submit jobs. Have you looked at this page?

Edit: Unfortunately the link for the submit script on that page appears to be broken.

• 1 views • link
written by GenoMax GenoMax

NOTE: Comments verifying the authenticity of the post have been cleaned up.

• 1 views • link
written by Ram Ram

1 answer

The page http://www.theseed.org/servers/ mentions there is a package called "RASTserver.pm", you can search for this package and find more information. Also, the RAST blog has a post about the The RAST batch interface.

• 1 views • link
written by h.mon h.mon

Log in to answer this question.

More posts like this