What software tool is proper for the gap closing of the de novo produced illumina bacterial genome contig, and what can be installed through brew or sudo apt?
What software tool is proper for the gap closing of the de novo produced illumina bacterial genome contig, and what can be installed through brew or sudo apt? And what other tools are used for the contig preprocessing before submitting it to the annotation with RAST, Prokka, BG7?
• 154 views
•
link
written
by
plantgenomics •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Construction of single sequence assembly out of contigs
written by Bushra Bibi
-
Filtered reads from assembly and raw reads?
written by el97004 •
-
Prokka Annotation for Bacterial Transcriptomes
written by gabriel.jabud •
-
Are there any analogs of the RAST and Prokka software for the plant transcriptome and genome annota…
written by uk_plant_parasite_genome •
-
What annotation software is proper for a produced Pine transcriptome contigs in fasta format?
written by plantgenomics •
-
What software is proper for the reference guided de novo assmebly and annotation of the Betula birc…
written by oxfordsoccer •
-
What software to choose to do reference-assisted Birch Betula chloroplast genome assembly and subs…
written by oxfordsoccer •
-
What tools are proper to preprocess FASTA coming from Velvet assembler into the Prokka, BG7 and RAS…
written by hockeytoronto2018 •
-
What desktop GUI software is proper for a plant transcriptome de novo assembly and result annotatio…
written by eurobioinformatics •
-
What tools are proper for plant genome pre- and post-assembly and annotation of the de novo results?
written by bioinformatics_bel •
You can’t magically close gaps without more sequencing.
Are you looking for scaffolding programs?
OK, advise good scaffolding programs, which are easily installed on Linux Mint, thx. How do you define a scaffold and how to process it?
Why don’t you tell us what you actually want to achieve first? If you don’t know what a scaffold is or what to do with it, why would you want to scaffold?