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Any database for downloading cancer cell-lines transcriptome differential expressed gene (DEG) list? (Normal vs cancer cell-lines)

Hi guys,

I'm new to cancer research. I noticed that there are cancer databases out there (e.g. TCGA). I would like to ask if there is any databases that let people download lists of gene that are differentially expressed in normal tissue vs cancer cell lines?

Thanks a lot!

rna-seq deg database cancer microarray

2 answers

Check out https://portals.broadinstitute.org/ccle

How about expression atlas: https://www.ebi.ac.uk/gxa/home

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