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Do some cancer type data in RTCGA cannot be downloaded?

When I try to download some mRNA data from RTCGA, for example, ACC or ESCC, LIHC, t R reported:

Error in expressionsTCGA(ACC.mRNA, extract.cols = c("GATA3", "PTEN", "XBP1", : object 'ACC.mRNA' not found.

So, is it my coding problem or the package is not working at the moment?

Many thanks.

tcga rtcga
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updated by aditi.qamra aditi.qamra • written by sxs870917 • sxs870917

1 answer

Seems like ACC.mRNA is not included in the RTCGA.mRNA package. You can use Xena browser (https://xenabrowser.net/) or http://firebrowse.org/ to download gene expression for ACC.

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written by aditi.qamra aditi.qamra

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