Hi,
I am trying to run some shared segment analysis on phased genotype data using GERMLINE 1.5.3. However I get the following error when I execute my bash script:
/lib64/libc.so.6: versionGLIBC_2.14' not found (required by germline-1-5-3/bin/germline)
/usr/lib64/libstdc++.so.6: versionGLIBCXX_3.4.15' not found (required by germline-1-5-3/bin/germline)
/usr/lib64/libstdc++.so.6: versionCXXABI_1.3.8' not found (required by germline-1-5-3/bin/germline)
/usr/lib64/libstdc++.so.6: versionGLIBCXX_3.4.21' not found (required by germline-1-5-3/bin/germline)
/usr/lib64/libstdc++.so.6: versionCXXABI_1.3.9' not found (required by germline-1-5-3/bin/germline)
How do I find and install these?
Thanks
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written
by
moithuti •
You're using an incredibly old kernel and version of libc which you cannot upgrade without completely upgrading your system. Use a server with more recent kernel and version of libc.
Hi Devon,
I am a user on a multiple user server. What should I recommend to the systems admin?
If they like RHEL, then something from release 7.
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Please give your system's details and OS version. Did you already try to search for the error message in a search engine?
Hi Kevin,,
I looked up how to find the OS version and my output says Red Hat Enterprise Linux release 6.10 (Santiago). I had also tried out a suggested solution from Ask Ubuntu. I ran: sudo install libc6 and got:
install: cannot stat `libc6': No such file or directory
What about trying to install via
yum?I have browsed the entry on yum and looks like it may achieve what need. But given what is posted below by Devon, maybe I should just send in a request to the system admin. I have limited unix experience, however I try to see if I can solve any problem I encounter or try get advice on how to solve the problem before asking our systems admin for help.
Upgrading libc is a good way to completely hose your system, definitely leave this for the sysadmin.
Thanks for the helpful suggestions