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Ivan
Ivan
Reputation:
60
Joined:
4.7 years ago
Last seen:
1.9 years ago
Location:
Croatia
Latest posts by user
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Comment: Comment: Hypergeometric test equivalent for difference between two sets of genes list ins
written by Ivan • Ivan
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2 replies
1.4K views
Hypergeometric test equivalent for difference between two sets of genes list instead of intersection
hypergeometric test
written by Ivan • Ivan
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1 reply
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Comment: Comment: Snakemake wildcards overwriting one another
written by Ivan • Ivan
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3 replies
1.5K views
Snakemake wildcards overwriting one another
snakemake
updated by raphael.B • raphael.B • written by Ivan • Ivan
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Comment: Comment: Can read fragment size be shorter than read length size?
written by Ivan • Ivan
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2 replies
1.1K views
Can read fragment size be shorter than read length size?
ngs samtools
updated by Ram Ram • written by Ivan • Ivan
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Comment: Comment: Pass a python dictionary as a snakemake variable (input and output)
written by Ivan • Ivan
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1 reply
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Comment: Comment: Pass a python dictionary as a snakemake variable (input and output)
written by Ivan • Ivan
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4 replies
3.3K views
Pass a python dictionary as a snakemake variable (input and output)
python snakemake widlcards
written by Ivan • Ivan
2 votes
0 replies
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Answer: Answer: Extract all regions in a genome that are not assembly gaps from a FASTA file qui
written by Ivan • Ivan
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2 replies
1.1K views
Extract all regions in a genome that are not assembly gaps from a FASTA file quickly
fasta
written by Ivan • Ivan
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2 replies
1.4K views
Determining which chromosome is the sex chromosome from FASTA file
sex chromosomes genome reference fasta
updated by cpad0112 cpad0112 • written by Ivan • Ivan
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1 reply
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Answer: Answer: How to automate bwa, samtools, bcftools upto variant calling steps without savin
written by Ivan • Ivan
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Answer: Answer: Align split-reads with bowtie-2 using snakemake
written by Ivan • Ivan
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1 reply
1.9K views
Align split-reads with bowtie-2 using snakemake
snakemake bowtie2
written by Ivan • Ivan
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Comment: Comment: Using snakemake to download split-reads by SRA number
written by Ivan • Ivan
1 vote
2 replies
2.5K views
Using snakemake to download split-reads by SRA number
snakemake sratoolkit
written by Ivan • Ivan
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1 reply
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Comment: Comment: Executing snakemake array jobs on cluster
written by Ivan • Ivan
2 votes
3 replies
3.2K views
Executing snakemake array jobs on cluster
snakemake cluster
updated by dariober dariober • written by Ivan • Ivan
1 vote
2 replies
1.7K views
Extract only locations of annotated genes from a reference genome
annotation refseq coding-genes
updated by MirianT_NCBI • MirianT_NCBI • written by Ivan • Ivan
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