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Mismatch analysis for 500K SNPs

I have a population for which I have the genotyped data at 500K SNPs. I also have the haplogroup data for each individual. I am really new to this and therefore I sound like an utter noob, but if someone could guide me in understanding how to go about making a mismatch analysis using this data.

arlequin populationgenetics tajima'sd fu'sf
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written by anir1.618 • anir1.618

Can you be more specific of what you mean by mismatch analysis?

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written by guillaume.rbt guillaume.rbt

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