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Obtaining a list of SNPs that do not vary in different populations
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2.4 years ago
HumeMarx • 20
United Kingdom

Hi

I am looking at some genotyped data from a custom built array, and I wanted to look at snps that have relatively the same minor allele frequencies in different populations.

How should I go about this? Is it simply a case of downloading 1000 genome data from somewhere and looking at the MAF for each population, compare the frequency for each snp etc??

Is there a more sophisticated way of doing this for someone who doesn't have much coding ability?

Thanks

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